YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S15A4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	42	0.71
Non-Cytoplasmic	43	64	0.72
Transmembrane Helix	65	86	0.91
Cytoplasmic	87	95	0.81
Transmembrane Helix	96	116	0.94
Non-Cytoplasmic	117	156	0.91
Transmembrane Helix	157	177	0.89
Cytoplasmic	178	196	0.94
Transmembrane Helix	197	217	0.96
Non-Cytoplasmic	218	225	0.77
Transmembrane Helix	226	248	0.89
Cytoplasmic	249	315	0.99
Transmembrane Helix	316	335	0.88
Non-Cytoplasmic	336	362	0.87
Transmembrane Helix	363	382	0.92
Cytoplasmic	383	400	0.92
Transmembrane Helix	401	421	0.92
Non-Cytoplasmic	422	456	0.93
Transmembrane Helix	457	476	0.94
Cytoplasmic	477	488	0.79
Transmembrane Helix	489	511	0.93
Non-Cytoplasmic	512	530	0.92
Transmembrane Helix	531	552	0.95
Cytoplasmic	553	572	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGERAPLLG SRRAAAAAGV FAGRRAACGA VLLAELLERA AFYGVTANLV LFLNGAPFNW  60
   61 EGAQASQALL LFMGLTYLGS PFGGWLADAR LGRARAILLS LALYLLGMLA FPLLAAPRSR 120
  121 SFLCGDPHPE LVRNCSAPFP NGTAVCPDAA ARRCAPATFA GLVLVGLGVA TVKANITPFG 180
  181 ADQVKDRGPE ATRRFFNWFY WSINLGAILS LGGIAYIQQN VSFLTGYLIP TVCVAIAFLV 240
  241 FLCGQSVFIT KPPDGSAFTD MFRILTYSCC SQRGGQRRSG EGLGVFQQSS KHSLFDSCKM 300
  301 SRGGPFTEDK VEDVKALVKI VPVFLALIPY WTVYFQMQTT YVLQSLHLKI PEISSITTTH 360
  361 HTLPAAWLTM FDAVLILLLI PLKDKLVDPV LRRHGLLPSS LKRIAVGMFF VTCSAFAAGI 420
  421 LESKRLDLVK EKTINQTIGG VVYHAADLPI WWQIPQYVLI GISEIFASIA GLEFAYSAAP 480
  481 KSMQSAIMGL FFFFSGIGSF VGSGLLALVS LKAIGWMSSH TDFGNINSCH LHYYFFLLAA 540
  541 IQGATLLLFL IVSVKYDRQR ARTDGGTAST RT