YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26453349, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQDMPKPSE AARCCSGLAR RVLTITFALL ILGLMTWAYA AGVPLASDPY GLLAFGLYGA  60
   61 FLSAHLVAQS LFAYLEHRRV TVAARRAFAK GPLDAATARS VALTISAYQE DPTYLRQCLT 120
  121 SARALLYPRT RLRVLMVVDG NRAEDLYMVD MFREVFADED PATYVWDGNY HQPWEPAEAA 180
  181 GAVGEGAYRE VEAEDPGRLA VEALVRTRRC VCVAQRWGGK REVMYTAFKA LGDSVDYVQV 240
  241 CDSDTRLDPM ALLELVRVLD EDPRVGAVGG DVRILNPLDS WVSFLSSLRY WVAFNVERAC 300
  301 QSYFHCVSCI SGPLGLYRNN LLQQFLEAWY NQKFLGTHCT FGDDRHLTNR MLSMGYATKY 360
  361 TSRSRCYSET PSSFLRWLSQ QTRWSKSYFR EWLYNALWWH RHHAWMTYEA VVSGLFPFFV 420
  421 AATVLRLFYA GRPWALLWVL LCVQGVALAK AAFAAWLRGC LRMVLLSLYA PLYMCGLLPA 480
  481 KFLALVTMNQ SGWGTSGRKK LAANYVPVLP LALWALLLLG GLIRSVAQEV RADWSGPSRA 540
  541 AEAYHLAAGA SAYVAYWVIM LTIYWVGVRR LCRRRSGGYR VQV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	51	0.83
Transmembrane Helix	52	75	0.87
Cytoplasmic	76	404	0.87
Transmembrane Helix	405	428	0.84
Non-Cytoplasmic	429	433	0.47
Transmembrane Helix	434	457	0.84
Cytoplasmic	458	458	0.44
Transmembrane Helix	459	473	0.51
Non-Cytoplasmic	474	474	0.01
Transmembrane Helix	475	489	0.64
Cytoplasmic	490	500	0.63
Transmembrane Helix	501	526	0.78
Non-Cytoplasmic	527	543	0.68
Transmembrane Helix	544	568	0.88
Cytoplasmic	569	583	0.71