YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTR1A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CYICHSLKYD RIYSNKNSLC YVFLIWTLTL IAIMPNLQTG TLQYDPRIYS CTFTQSVSSA  60
   61 YTIALVVFHF VVPMIIVTFC YLRIWILVLQ VRRRVKPDSK PKLKPQDFRN FVTMFVVFVL 120
  121 FALCWAPLNF IGLIVASDPA TMAPRIPEWL FVASYY

Type	Start	End	Confidence
Cytoplasmic	1	17	0.94
Transmembrane Helix	18	37	0.91
Non-Cytoplasmic	38	64	0.87
Transmembrane Helix	65	87	0.92
Cytoplasmic	88	109	0.93
Transmembrane Helix	110	134	0.87
Non-Cytoplasmic	135	156	0.94