YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4838513, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIDQSSLV SSSTDSPPRP PPAFKYQFVT EPEDEEDEEE EEDEEEDDED LEELEVLERK  60
   61 PAAGLSAAAV PPAAAAPLLD FSSDSVPPAP RGPLPAAPPA APERQPSWER SPAAPAPSLP 120
  121 PAAAVLPSKL PEDDEPPARP PPPPPAGASP LAEPAAPPST PAAPKRRGSG SVDETLFALP 180
  181 AASEPVIPSS AVVDLLYWRD IKKTGVVFGA SLFLLLSLTV FSIVSVTAYI ALALLSVTIS 240
  241 FRIYKGVIQA IQKSDEGHPF RAYLESEVAI SEELVQKYSN SALGHVNSTI KELRRLFLVD 300
  301 DLVDSLKFAV LMWVFTYVGA LFNGLTLLIL ALISLFSIPV IYERHQVQID HYLGLANKSV 360
  361 KDAMAKIQAK IPGLKRKAD

Type	Start	End	Confidence
Cytoplasmic	1	205	0.82
Transmembrane Helix	206	233	0.83
Non-Cytoplasmic	234	312	0.74
Transmembrane Helix	313	338	0.83
Cytoplasmic	339	379	0.74