YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47477875, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIDQSSLV SSSTDSPPRP PPAFKYQFVT EPEDEEDEEE EEDEEEDDED LEELEVLERK  60
   61 PAAGLSAAAV PPAAAAPLLD FSSDSVPPAP RGPLPAAPPA APERQPSWER SPAAPAPSLP 120
  121 PAAAVLPSKL PEDDEPPARP PPPPPAGASP LAEPAAPPST PAAPKRRGSG SVVVDLLYWR 180
  181 DIKKTGVVFG ASLFLLLSLT VFSIVSVTAY IALALLSVTI SFRIYKGVIQ AIQKSDEGHP 240
  241 FRAYLESEVA ISEELVQKYS NSALGHVNST IKELRRLFLV DDLVDSLKFA VLMWVFTYVG 300
  301 ALFNGLTLLI LALISLFSIP VIYERHQVQI DHYLGLANKS VKDAMAKIQA KIPGLKRKAD 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	186	0.90
Transmembrane Helix	187	214	0.83
Non-Cytoplasmic	215	294	0.78
Transmembrane Helix	295	319	0.85
Cytoplasmic	320	360	0.79