YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEQTPMCS MDLREIKGKE TNMADSYHGM SWYEQYIQPC VVELLGSALF IFIGCLSVIE  60
   61 NSPNTGLLQP ALAHGLALGL IIATLGNISG GHFNPAVSLA VTLVGGLKTM LLIPYWVSQL 120
  121 FGGMIGAALA KVVSPEERFW NASGAAFAIV QEQEQVAEAL GVEIVMTMLL VLAVCMGAVN 180
  181 EKTMGPLAPF SIGFSVIVDI LAGGGISGAC MNPARAFGPA VMAGYWDFHW IYWLGPLLAG 240
  241 LFVGLLIRLF IGDEKTRLIL KSR

Type	Start	End	Confidence
Cytoplasmic	1	39	0.87
Transmembrane Helix	40	59	0.93
Non-Cytoplasmic	60	70	0.72
Transmembrane Helix	71	91	0.87
Cytoplasmic	92	98	0.58
Transmembrane Helix	99	130	0.62
Non-Cytoplasmic	131	158	0.86
Transmembrane Helix	159	179	0.91
Cytoplasmic	180	189	0.77
Transmembrane Helix	190	210	0.92
Non-Cytoplasmic	211	229	0.89
Transmembrane Helix	230	251	0.96
Cytoplasmic	252	263	0.96