YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPRD_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPVPSARAE LQFSLLANVS DTFPSAFPSA SANASGSPGA RSASSLALAI AITALYSAVC  60
   61 AVGLLGNVLV MFGIVRYTKL KTATNIYIFN LALADALATS TLPFQSAKYL METWPFGELL 120
  121 CKAVLSIDYY NMFTSIFTLT MMSVDRYIAV CHPVKALDFR TPAKAKLINI CIWVLASGVG 180
  181 VPIMVMAVTQ PRDGAVVCTL QFPSPSWYWD TVTKICVFLF AFVVPILIIT VCYGLMLLRL 240
  241 RSVRLLSGSK EKDRSLRRIT RMVLVVVGAF VVCWAPIHIF VIVWTLVDIN RRDPLVVAAL 300
  301 HLCIALGYAN SSLNPVLYAF LDENFKRCFR QLCRAPCGGQ EPGSLRRPRQ ATARERVTAC 360
  361 TPSDGPGGGA AA

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.56
Transmembrane Helix	47	75	0.82
Cytoplasmic	76	85	0.78
Transmembrane Helix	86	107	0.80
Non-Cytoplasmic	108	128	0.78
Transmembrane Helix	129	149	0.74
Cytoplasmic	150	166	0.90
Transmembrane Helix	167	188	0.90
Non-Cytoplasmic	189	214	0.92
Transmembrane Helix	215	238	0.93
Cytoplasmic	239	258	0.95
Transmembrane Helix	259	282	0.90
Non-Cytoplasmic	283	296	0.87
Transmembrane Helix	297	321	0.83
Cytoplasmic	322	372	0.92