YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60551363, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTEFTSLI PGMFDDYSYD STASTDDYMN LNFSSFFCKK NNVRQFASHF LPPLYWLVFV  60
   61 VGTVGNSLVI LVYWYCTRVK TMTDMFLLNL AIADLLFLAT LPFWAIAAAG QWMFQTFMCK 120
  121 VVNSMYKMNF YSCVLLIMCI SVDRYIAIVQ AMKAQVWRQK RLLYSKMVCI TIWVMAAVLC 180
  181 TPEILYSQIS GESGIAICTM VYPKDKNAKL KSAVLILKVT LGFFLPFMVM AFCYTIIIHT 240
  241 LVQAKKSSKH KALKVTITVL TVFIMSQFPY NCILVVQAVD AYTMFISNCT ISTNIDICFQ 300
  301 VTQTIAFFHS CLNPVLYVFV GERFRRDLVK TLKNLGCISQ AQWVSFTRRE GSLKLSSMLL 360
  361 ETTSGALSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.98
Transmembrane Helix	54	76	0.94
Cytoplasmic	77	85	0.91
Transmembrane Helix	86	108	0.93
Non-Cytoplasmic	109	127	0.90
Transmembrane Helix	128	148	0.92
Cytoplasmic	149	162	0.94
Transmembrane Helix	163	186	0.86
Non-Cytoplasmic	187	221	0.92
Transmembrane Helix	222	242	0.92
Cytoplasmic	243	254	0.87
Transmembrane Helix	255	278	0.77
Non-Cytoplasmic	279	300	0.79
Transmembrane Helix	301	320	0.69
Cytoplasmic	321	369	0.84