YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NSMA_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHNFSLRLR VFNLNCWDIP YLSKHRADRM KRLGDFLNLE SFDLALLEEV WSEQDFQYLK  60
   61 QKLSLTYPDA HYFRSGIIGS GLCVFSRHPI QEIVQHVYTL NGYPYKFYHG DWFCGKAVGL 120
  121 LVLHLSGLVL NAYVTHLHAE YSRQKDIYFA HRVAQAWELA QFIHHTSKKA NVVLLCGDLN 180
  181 MHPKDLGCCL LKEWTGLRDA FVETEDFKGS EDGCTMVPKN CYVSQQDLGP FPFGVRIDYV 240
  241 LYKAVSGFHI CCKTLKTTTG CDPHNGTPFS DHEALMATLC VKHSPPQEDP CSAHGSAERS 300
  301 ALISALREAR TELGRGIAQA RWWAALFGYV MILGLSLLVL LCVLAAGEEA REVAIMLWTP 360
  361 SVGLVLGAGA VYLFHKQEAK SLCRAQAEIQ HVLTRTTETQ DLGSEPHPTH CRQQEADRAE 420
  421 EK

Type	Start	End	Confidence
Cytoplasmic	1	69	0.92
Transmembrane Helix	70	90	0.61
Non-Cytoplasmic	91	111	0.70
Transmembrane Helix	112	134	0.63
Cytoplasmic	135	324	0.96
Transmembrane Helix	325	347	0.94
Non-Cytoplasmic	348	353	0.90
Transmembrane Helix	354	375	0.94
Cytoplasmic	376	422	0.97