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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: C1QR1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTSTGLLLL LGLLGQLWAG AAADSEAVVC EGTACYTAHW GKLSAAEAQH RCNENGGNLA  60
   61 TVKSEEEARH VQEALAQLLK TKAPSETKIG KFWIGLQREK GKCTYHDLPM KGFSWVGGGE 120
  121 DTTYSNWYKA SKSSCISKRC VSLILDLSLK PHPSHLPKWH ESPCGTPDAP GNSIEGFLCK 180
  181 FNFKGMCSPL ALGGPGQLTY TTPFQATTSS LKAVPFASVA NVVCGDEAES KTNYYLCKET 240
  241 TAGVFHWGSS GPLCVSPKFG CSFNNGGCQQ DCFEGGDGSF RCGCRPGFRL LDDLVTCASR 300
  301 NPCSSNPCTG GGMCHSVPLS ENYTCHCPRG YQLDSSQVHC VDIDECEDSP CDQECINTPG 360
  361 GFHCECWVGY QSSGSKEEAC EDVDECTAAY SPCAQGCTNT DGSFYCSCKE GYIMSGEDST 420
  421 QCEDIDECLG NPCDTLCINT DGSFRCGCPA GFELAPNGVS CTRGSMFSEL PARPPQKEDK 480
  481 GDGKESTVPL TEMPGSLNGS KDVSNRAQTT DLSIQSDSST ASVPLEIEVS SEASDVWLDL 540
  541 GTYLPTTSGH SQPTHEDSVP AHSDSDTDGQ KLLLFYILGT VVAISLLLAL ALGLLIYLKR 600
  601 KAKKEEIKEK KAQNAADSYS WIPERAESRA PENQYSPTPG TDC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle