YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16758962, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPEPQPEPV TLLVKSPNQR HRDLELSGDR GWSVSRLKAH LSRVYPERPR PEDQRLIYSG  60
   61 KLLLDHQCLQ DLLPKQEKRH VLHLVCNVRS PSKKPEASTK GAESTEQPDN TSQAQYPGDS 120
  121 SSDGLREREV LRNLPPSGWE NVSRPEAVQQ TFQGLGPGFS GYTTYGWLQL SWFQQIYARQ 180
  181 YYMQYLAATA ASGAFGPTPS AQEIPVVSTP APAPIHNQFP AENQPANQNA AAQAVVNPGA 240
  241 NQNLRMNAQG GPLVEEDDEI NRDWLDWTYS AATFSVFLSI LYFYSSLSRF LMVMGATVVM 300
  301 YLHHVGWFPF RQRPVQNFPD DGPPQEAANQ DPNNNLQGGL DPEMEDPNRL PVGREVLDPE 360
  361 HTSPSFMSTA WLVFKTFFAS LLPEGPPALA N

Type	Start	End	Confidence
Non-Cytoplasmic	1	270	0.54
Transmembrane Helix	271	305	0.66
Cytoplasmic	306	391	0.49