YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLN8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVSNHGVA ESIFDLDYAS WKIRSTLAVA GFVFYLGVFV VCHQLSSSLN ATYRSLLAKE  60
   61 KVFWNLAATR AVFGIQSTAA GLWALLGDPV LYSNKALGQQ NWCWFHITTA TGFFFFENAA 120
  121 VHLSNLFFRT FDLFLVVHHL FAFLGFLGSA VNLRAGHYLA MTTLLLEMST PFTCVSWMLL 180
  181 KAGWSHSLFW KVNQWLMIHM FHCRMILTYH MWWVCFQHWD ALASSLYLPH LALFLFGLAL 240
  241 LTVIINPYWT HKKTQQLLNP VDWNFAQPEA KGDRQERTNG QVPRKKRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.83
Transmembrane Helix	23	45	0.84
Cytoplasmic	46	65	0.75
Transmembrane Helix	66	86	0.91
Non-Cytoplasmic	87	101	0.84
Transmembrane Helix	102	123	0.87
Cytoplasmic	124	132	0.62
Transmembrane Helix	133	151	0.91
Non-Cytoplasmic	152	158	0.59
Transmembrane Helix	159	180	0.86
Cytoplasmic	181	194	0.73
Transmembrane Helix	195	214	0.84
Non-Cytoplasmic	215	225	0.75
Transmembrane Helix	226	249	0.87
Cytoplasmic	250	288	0.93