YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C1QA_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSQGWLVA CVLAVTLVWT VAEDVCRAPN GKDGVAGIPG RPGRPGLKGE RGEPGAAGIR  60
   61 TGIRGLKGDM GESGPPGKPG NVGFPGPTGP LGNSGPQGLK GVKGNPGNIR DQPRPAFSAI 120
  121 RQNPPTYGNV VVFDKVLTNQ ENPYQNRTGH FICAVPGFYY FTFQVISKWD LCLSIVSSSR 180
  181 GQPRNSLGFC DTNSKGLFQV LAGGTVLQLQ RGDEVWIEKD PAKGRIYQGT EADSIFSGFL 240
  241 IFPSA

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	245	0.99