YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLLP_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEFPSKVST RTSSPAQGVG ASVSAMRPDL GFVRSALGVL ALLQLVLGLL VWALIADTPY  60
   61 HLYPAYGWVM FVAVFLWLVT IVFFIIYLFQ LHMKLYMVPW PLVLLVFFVA ATVLYITAFV 120
  121 ACAAAVDLTS LRGSRPYNQR SAASFFACLV MIAYGLSAFF SFQAWRGVGS NAATSQMAGG 180
  181 YS

Type	Start	End	Confidence
Cytoplasmic	1	31	0.82
Transmembrane Helix	32	56	0.88
Non-Cytoplasmic	57	65	0.74
Transmembrane Helix	66	89	0.91
Cytoplasmic	90	99	0.69
Transmembrane Helix	100	125	0.86
Non-Cytoplasmic	126	141	0.75
Transmembrane Helix	142	162	0.94
Cytoplasmic	163	182	0.75