YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|154091350, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFTEANYGM EDYTGSDYSM FPETEPCSLQ EVRDFTKVFV PIAYSLICVF GLLGNIMVVI  60
   61 TFAFYKKARS MTDVYLLNMA ITDILFVLTL PFWAVTHATD TWIFGNTMCK LMKGTYAVNF 120
  121 NCGMLLLACI SMDRYIAIVQ ATKSFRVRSR TLTHSKVICL TVWFVSIIIS SPTFFFNKQY 180
  181 KLQGRDVCEP QYKLVSEPIT WKLLGMGLEL LFGFFIPLLF MVFCYLFIIK TLVQAQNSKR 240
  241 HRAIRVVIAV VLVFLACQIP HNMVLLVTAA NTGKMGRSCS AEKALAYARN VAEVLAFLHC 300
  301 CLNPVLYAFI GQKFRSYFMK IMKDVWCMRR KSKVPTFFCA RVYSESYISR QTSETVENDN 360
  361 ASSFTM

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.97
Transmembrane Helix	42	65	0.93
Cytoplasmic	66	73	0.95
Transmembrane Helix	74	95	0.94
Non-Cytoplasmic	96	115	0.89
Transmembrane Helix	116	137	0.91
Cytoplasmic	138	156	0.85
Transmembrane Helix	157	176	0.91
Non-Cytoplasmic	177	209	0.94
Transmembrane Helix	210	229	0.95
Cytoplasmic	230	242	0.85
Transmembrane Helix	243	265	0.87
Non-Cytoplasmic	266	294	0.88
Transmembrane Helix	295	311	0.90
Cytoplasmic	312	366	0.90