YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62461588, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGYVVAIFL SSIFLYYVLY CILWGTNGYW FPNEEMKSKN NVKNCFKKPA FASLLRFPQF  60
   61 YPFLCKADFV KVAATYGTNN FLLPYGVKTF ESYFRSALSK LQSCDLFGEF DTVPCKRCVV 120
  121 VGNGGVLKNK TLGAKIDSYD VIIRMNNGPV LGHEEEVGKR TTFRLFYPES VFSDPSHYDP 180
  181 NTTAVLVVFK PQDLRWLMEI LIGKKINTDG FWKKPALKLI YKQYQIRILD PYIIREAAFQ 240
  241 LLRFPRVFPK DQKPKHPTTG IIALTLAFHI CSEVHLAGFK YNFYTPDSPL HYYGNATMSL 300
  301 MKKNAYHNLT AEQLFLKNLI KKKMVINLTQ N

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	31	0.74
Non-Cytoplasmic	32	331	0.72