YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNA5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISLVPLEN GSAMTLRGGG EAGASCVQTP RGECGCPPTS GLNNQSKETL LRGRTTLEDA  60
   61 NQGGRPLPPM AQELPQPRRL SAEDEEGEGD PGLGTVEEDQ APQDAGSLHH QRVLINISGL 120
  121 RFETQLGTLA QFPNTLLGDP AKRLHYFDPL RNEYFFDRNR PSFDGILYYY QSGGRLRRPV 180
  181 NVSLDVFADE IRFYQLGDEA MERFREDEGF IKEEEKPLPR NEFQRQVWLI FEYPESSGSA 240
  241 RAIAIVSVLV ILISIITFCL ETLPEFRDER ELLRHPPVPP QPPAPAPGIN GSVSGALSSG 300
  301 PTVAPLLPRT LADPFFIVET TCVIWFTFEL LVRFFACPSK AEFSRNIMNI IDVVAIFPYF 360
  361 ITLGTELAEQ QPGGGGQNGQ QAMSLAILRV IRLVRVFRIF KLSRHSKGLQ ILGKTLQASM 420
  421 RELGLLIFFL FIGVILFSSA VYFAEADNHG SHFSSIPDAF WWAVVTMTTV GYGDMRPITV 480
  481 GGKIVGSLCA IAGVLTIALP VPVIVSNFNY FYHRETDHEE QAALKEEQGN QRRESGLDTG 540
  541 GQRKVSCSKA SFCKTGGSLE SSDSIRRGSC PLEKCHLKAK SNVDLRRSLY ALCLDTSRET 600
  601 DL

Type	Start	End	Confidence
Non-Cytoplasmic	1	239	0.68
Transmembrane Helix	240	263	0.84
Cytoplasmic	264	283	0.62
Transmembrane Helix	284	304	0.47
Non-Cytoplasmic	305	314	0.65
Transmembrane Helix	315	336	0.77
Cytoplasmic	337	346	0.83
Transmembrane Helix	347	365	0.81
Non-Cytoplasmic	366	380	0.71
Transmembrane Helix	381	399	0.78
Cytoplasmic	400	422	0.91
Transmembrane Helix	423	444	0.94
Non-Cytoplasmic	445	458	0.72
Transmembrane Helix	459	473	0.88
Cytoplasmic	474	483	0.66
Transmembrane Helix	484	504	0.91
Non-Cytoplasmic	505	602	0.89