YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109475071, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPHWWDQL RAGSSEVDWC EDNYTIVPAI AEFYNTISNV LFFILPPICM CLFRQYATCF  60
   61 NSGIYLIWTL LVVVGIGSVY FHATLSFLGQ MLDELAILWV LMCALAMWFP RRYLPKIFRN 120
  121 DRGRFKAVVC VLSAVTTCLA FVKPAINNIS LMILGVPCTA LLIAELKRCD NVRVFKLGLF 180
  181 SGLWWTLALF CWISDRAFCE LLSSFHFPYL HCVWHILICL AAYLGCVCFA YFDAASEIPE 240
  241 QGPVIRFWPS EKWAFIGVPY VSLLCAHKKS PVKIT

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.77
Transmembrane Helix	33	53	0.70
Cytoplasmic	54	63	0.75
Transmembrane Helix	64	84	0.94
Non-Cytoplasmic	85	94	0.74
Transmembrane Helix	95	114	0.88
Cytoplasmic	115	122	0.95
Transmembrane Helix	123	142	0.89
Non-Cytoplasmic	143	148	0.62
Transmembrane Helix	149	166	0.76
Cytoplasmic	167	173	0.69
Transmembrane Helix	174	194	0.86
Non-Cytoplasmic	195	210	0.70
Transmembrane Helix	211	232	0.92
Cytoplasmic	233	275	0.75