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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NRDC_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRVAVAAV FATGRKLRCE AGRDVTAVGR IEARGLCEES AKPFPTLTMP GRNKAKSTCS  60
   61 CPDLQPNGQD LGESGRVARL GADESEEEGR SLSNVGDPEI IKSPSDPKQY RYIKLQNGLQ 120
  121 ALLISDLSNV EGKTGNATDE EEEEEEEEEE GEEEEEEEED DDDDDDEDSG AEIQDDDEEG 180
  181 FDDEEEFDDD EHDDDDLDNE ENELEELEER VEARKKTTEK QSAAALCVGV GSFADPDDLP 240
  241 GLAHFLEHMV FMGSLKYPDE NGFDAFLKKH GGSDNASTDC ERTVFQFDVQ RKYFKEALDR 300
  301 WAQFFIHPLM IRDAIDREVE AVDSEYQLAR PSDANRKEML FGSLARPGHP MGKFFWGNAE 360
  361 TLKHEPKKNN IDTHARLREF WMRYYSAHYM TLVVQSKETL DTLEKWVTEI FSQIPNNGLP 420
  421 KPNFSHLTDP FDTPAFNKLY RVVPIRKIHA LTITWALPPQ QQHYRVKPLH YISWLVGHEG 480
  481 KGSILSYLRK KCWALALFGG NGETGFEQNS TYSVFSISIT LTDEGYEHFY EVAHTVFQYL 540
  541 KMLQKLGPEK RVFEEIQKIE DNEFHYQEQT DPVEYVENMC ENMQLYPRQD FLTGDQLLFE 600
  601 YKPEVIAEAL NQLVPQKANL VLLSGANEGR CDLKEKWFGT QYSIEDIENS WTELWKSNFD 660
  661 LNSDLHLPAE NKYIATDFTL KAFDCPETEY PAKIVNTPQG CLWYKKDNKF KIPKAYIRFH 720
  721 LISPLIQKSA ANVVLFDIFV NILTHNLAEP AYEADVAQLE YKLVAGEHGL IIRVKGFNHK 780
  781 LPLLFQLIID YLTEFSSTPA VFTMITEQLK KTYFNILIKP ETLAKDVRLL ILEYSRWSMI 840
  841 DKYRALMDGL SLESLLNFVK DFKSQLFVEG LVQGNVTSTE SMDFLRYVVD KLNFVPLERE 900
  901 MPVQFQVVEL PSGHHLCKVR ALNKGDANSE VTVYYQSGTR SLREYTLMEL LVMHMEEPCF 960
  961 DFLRTKQTLG YHVYPTCRNT SGILGFSVTV GTQATKYNSE TVDKKIEEFL SSFEEKIENL1020
 1021 TEDAFNTQVT ALIKLKECED THLGEEVDRN WNEVVTQQYL FDRLAHEIEA LKSFSKSDLV1080
 1081 SWFKAHRGPG SKMLSVHVVG YGKYELEEDG APVCEDPNSR EGMQLIYLPP SPLLAESTTP1140
 1141 ITDIRAFTAT LSLFPYHKIV K

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle