YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10644517
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VCFVLFLPVY LATVLGNGLI VVTVNISKSL YSPMYFFLSY LSLVEILYSS TVVPKFITDL  60
   61 LHKIKTISLK GCLAQIFFFH FFGVTEILWL TVMAYDRYVA ICKPLYYTTI MSRPICHRLV 120
  121 AGSWVGGFFH SIIQIFITIP LPFCGPNIID HYFCDLHPLF KLACTDTFVV GVIMFVNSGL 180
  181 XSVFPFLXLV SSYIVILYNL RNHSAEGRRK ALSTCASHIM VVVLFFGPAI FLYLRPASTY 240
  241 TEDKLVAVFY TVITPMMNPI IYTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.55
Transmembrane Helix	6	26	0.85
Cytoplasmic	27	33	0.53
Transmembrane Helix	34	57	0.68
Non-Cytoplasmic	58	75	0.67
Transmembrane Helix	76	95	0.83
Cytoplasmic	96	118	0.68
Transmembrane Helix	119	139	0.85
Non-Cytoplasmic	140	177	0.75
Transmembrane Helix	178	200	0.84
Cytoplasmic	201	213	0.83
Transmembrane Helix	214	234	0.92
Non-Cytoplasmic	235	244	0.85
Transmembrane Helix	245	262	0.55
Cytoplasmic	263	264	0.45