YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10644525
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WISIPFSSMY TVALTGNCLI LLAVRRTHSL HQPMYYFLSM LALXDVGLSL STLPSTLAVL  60
   61 WFDYRFIDFN ACLIQMFFLH FFSVVESSVL LAMSFDRFVA ISNPLRYASV LTNTVIIRIG 120
  121 VAITTRATLS LLPLPFLLKR LNYCPGKIPL SHSFCXHADV MKLACADITV NILYGLYVVL 180
  181 STVGVDSLLI VXSYSLILYT VMGLASPRER VRTLNTCVSH ILAVLVFXIP VIGVSMIHRF 240
  241 GKHLPHIVHA LVAYVYLVVP PVXNPIIYSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	24	0.86
Cytoplasmic	25	34	0.74
Transmembrane Helix	35	58	0.86
Non-Cytoplasmic	59	75	0.70
Transmembrane Helix	76	95	0.90
Cytoplasmic	96	109	0.70
Transmembrane Helix	110	129	0.80
Non-Cytoplasmic	130	177	0.81
Transmembrane Helix	178	202	0.81
Cytoplasmic	203	215	0.80
Transmembrane Helix	216	238	0.89
Non-Cytoplasmic	239	245	0.81
Transmembrane Helix	246	268	0.82
Cytoplasmic	269	270	0.83