YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRAF3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVNLAPLRA WDDFFPGSDR FARPDFRDIS KWNNRVVSNL LYYQTNYLVV AAMMISVVGF  60
   61 LSPFNMILGG IIVVLVFTGF VWAAHNKDIL RRMKKQYPTA FVMVVMLASY FLISMFGGVM 120
  121 VFVFGITFPL LLMFIHASLR LRNLKNKLEN KMEGIGLKKT PMGIILDALE QQEDSINKFA 180
  181 DYISKARE

Type	Start	End	Confidence
Cytoplasmic	1	39	0.92
Transmembrane Helix	40	60	0.88
Non-Cytoplasmic	61	65	0.72
Transmembrane Helix	66	85	0.94
Cytoplasmic	86	96	0.87
Transmembrane Helix	97	114	0.91
Non-Cytoplasmic	115	119	0.59
Transmembrane Helix	120	139	0.87
Cytoplasmic	140	188	0.86