YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27685211, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAHPRPWL RLPPGPQPRP ELWALLFFLL LLAAAVPRSA PNDILGLRLP PEPVLNANTV  60
   61 CLTLPGLSRR QMEVCVRHPD VAASAIQGIQ IAIHECQHQF RDQRWNCSSL ETRNKVPYES 120
  121 PIFSRGFRES AFAYAIAAAG VVHAVSNACA LGKLKACGCD ASRRGDEEAF RRKLHRLQLD 180
  181 ALQRGKGLSH GVPEHPAIPP ASPGLQDSWE WGGCSPDVGF GERFSKDFLD SREPHRDIHA 240
  241 RMRLHNNRVG RQAVMENMRR KCKCHGTSGS CQLKTCWQVT PEFRTVGALL RNRFHRATLI 300
  301 RPHNRNGGQL EPGLAGAPSP APGTPGLRRR ASHSDLVYFE KSPDFCEREP RLDSAGTVGR 360
  361 LCNKSSTGPD SCGSMCCGRG HNILRQTRSE RCHCRFHWCC FVVCEECRIT EWVSVCK

Type	Start	End	Confidence
Signal Peptide	1	39	0.96
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	417	0.98