YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRE_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPKVLLMLL NMFLALQWRV GPHIKLENKP PAQDKVVFGP QPQPSGKKLP ARETELTADH  60
   61 TTERPRGKLT RASQILNTIL SNYDHKLRPS IGEKPTVVTV KVFVNSLGPI SILDMEYSID 120
  121 IIFYQTWYDE RLRYNDTFET LILHGNVVSQ LWIPDTFFRN SKRTQEYDIT IPNQMALIHK 180
  181 DGKVLYTVRM TIDARCSLHM LNFPMDSHSC PLSFSSFSYD EHEMIYKWEN FKLKIDAKNT 240
  241 WKLLEFDFTG VNNKTEIIST PVGDFMVMTF FFNVSRRFGF IVFQNYIPSS VTTMLSWVSF 300
  301 WIKIEAAAAR ASVGVSSVLT MATLGTFSRK NFPRVSYLTA LDFYIAICFV LCFCTLLEFT 360
  361 VLNFLTYNNI ERQASPKFYQ FPTNSRANAR TRARARTRAR ARARARQQQE VFVCEIVTYE 420
  421 ENAEEGYQWS PRSRRPQCPW RRCGRSYVCF RVLRKYFCMV PGCEGNNWQR GRICIHVYRL 480
  481 DNYSRVLFPI TFFFFNVVYW VICLNL

Type	Start	End	Confidence
Signal Peptide	1	22	0.89
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	279	0.97
Transmembrane Helix	280	301	0.84
Cytoplasmic	302	307	0.75
Transmembrane Helix	308	327	0.89
Non-Cytoplasmic	328	342	0.76
Transmembrane Helix	343	365	0.90
Cytoplasmic	366	482	0.90
Transmembrane Helix	483	503	0.82
Non-Cytoplasmic	504	506	0.76