YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSPG5_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAGGGGPG WGPPPVLLLL GVTLVLTAGA VPAREAGSAI EAEELVRSGL AWESRANDTR  60
   61 EEAGLPAAGE DETSWTERGS ELAAVGPGVG PEETLEASAA VTGTAWLEAD GTGLGGVTAE 120
  121 AGSGDAQTLP ATLQAPDEAL GSSTMPPAIP EATEASGPPS PTLRDKPSLV PELPKEIPLE 180
  181 VWLNLGGSTP DPQRPEPTFP LQGTLETQPA SDIIDIDYFE GLDSEGRGTD MGRFPGSPGT 240
  241 SENHPDTEGE TPSWSLLDLY DDFTPFDESD FYPTTSFYDD LEEEEEEEED KDAVGGGDLE 300
  301 DESDLLLPSQ KPGVGPGTGQ PTSRWHAVPP QHTLGMVPGG SISLRPRPGD PGKDLATSEN 360
  361 GTECRVGFVR HNGSCRSVCD LFPSYCHNGG QCYLVENIGA FCRCNTQDYI WHKGMRCESI 420
  421 ITDFQVMCVA VGSAALVLLL LFMMTVFFAK KLYLLKTENT KLRRTNKFRT PSELHNDNFS 480
  481 LSTIAEGSHP NVRKLCDTPC VSSPHARALA HCDNIVCQDD PSAPHKIQEA LKSRLKEEES 540
  541 FNIQNSMSPK LEGGKGDQDD LEVNCLQNNL T

Type	Start	End	Confidence
Signal Peptide	1	33	0.94
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	425	0.99
Transmembrane Helix	426	448	0.87
Cytoplasmic	449	571	0.95