YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71680988, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPRRWLFR MLLLVATSSG ILFMLYSSAG QGSPETQVPA RSTTSPRAFF EPKAPNSENR  60
   61 KSPSCQHSLS LAIQKDHRFR GLFDLSTPVL LWDGLFTQEL WNNLSQHKVP YGWQGLSRKV 120
  121 IASTLTLLKD PESAELFGAS GKLPLSCISC AVVGNGGILN GSRQGQKIDA HDYVFRINGA 180
  181 ITKGFELDVG TKTSFYGFTV NTMKNSLISY SKLGFTSVPQ GQDLRYIFIP SSIRDYLMLR 240
  241 SAILGVPVPE GPDKGDRPHI YFGPETSASK FKLLHPDFIG YLTERFLKSK LINTRFGDMY 300
  301 MPSTGALILL TALHACDQVS AYGFITNNYQ KYSDHYFERE KKPLIFYANH DLSLEAALWR 360
  361 DLHNAGILWL YQR

Type	Start	End	Confidence
Signal Peptide	1	30	0.76
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	373	0.99