YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGAT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.84
Transmembrane Helix	96	114	0.73
Non-Cytoplasmic	115	137	0.87
Transmembrane Helix	138	159	0.88
Cytoplasmic	160	172	0.92
Transmembrane Helix	173	194	0.92
Non-Cytoplasmic	195	200	0.73
Transmembrane Helix	201	220	0.91
Cytoplasmic	221	287	0.97
Transmembrane Helix	288	312	0.79
Non-Cytoplasmic	313	343	0.90
Transmembrane Helix	344	366	0.82
Cytoplasmic	367	411	0.93
Transmembrane Helix	412	430	0.87
Non-Cytoplasmic	431	436	0.75
Transmembrane Helix	437	456	0.90
Cytoplasmic	457	465	0.68
Transmembrane Helix	466	485	0.91
Non-Cytoplasmic	486	498	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDRGGAGSS RRRRTGSRVS VQGGSGPKVE EDEVREAAVS PDLGAGGDAP APAPAPAHTR  60
   61 DKDRQTSVGD GHWELRCHRL QDSLFSSDSG FSNYRGILNW CVVMLILSNA RLSLENLIKY 120
  121 GILVDPIQVV SLFLKDPYSW PAPCLIIASN IFIVATFQIE KRLSVGALTE QMGLLLHVVN 180
  181 LATIICFPAA VALLVESITP VGSLFALASY SIIFLKLSSY RDVNLWCRQR RVKAKAVSAG 240
  241 KKVSGAAAQN TVSYPDNLTY RDLYYFIFAP TLCYELNFPR SPRIRKRFLL RRVLEMLFFT 300
  301 QLQVGLIQQW MVPTIQNSMK PFKDMDYSRI IERLLKLAVP NHLIWLIFFY WLFHSCLNAV 360
  361 AELLQFGDRE FYRDWWNAES VTYFWQNWNI PVHKWCIRHF YKPMLRLGSN KWMARTGVFW 420
  421 ASAFFHEYLV SIPLRMFRLW AFTAMMAQVP LAWIVNRFFQ GNYGNAAVWV TLIIGQPVAV 480
  481 LMYVHDYYVL NYDAPVGA