YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEVCSLAF FKAVFAEFLA TLIFVFFGLG SALKWPSALP TILQISIAFG LAIGTLAQAL  60
   61 GPVSGGHINP AITLALLIGN QISLLRAVFY VAAQLVGAIA GAGILYWLAP LNARGNLAVN 120
  121 ALNNNTTPGK AMVVELILTF QLALCIFSST DSRRTSPVGS PALSIGLSVT LGHLVGIYFT 180
  181 GCSMNPARSF GPAVVMNRFS PSHWVFWVGP IVGAMLAAIL YFYLLFPSSL SLHDRVAVVK 240
  241 GTYEPEEDWE DHREERKKTI ELTAH

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	32	0.85
Non-Cytoplasmic	33	41	0.76
Transmembrane Helix	42	66	0.78
Cytoplasmic	67	86	0.69
Transmembrane Helix	87	109	0.91
Non-Cytoplasmic	110	130	0.82
Transmembrane Helix	131	150	0.84
Cytoplasmic	151	159	0.75
Transmembrane Helix	160	182	0.87
Non-Cytoplasmic	183	202	0.83
Transmembrane Helix	203	225	0.93
Cytoplasmic	226	265	0.86