YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRQKELMNR CGEMLHIRYR LLRQALAECL GTLILVMFGC GSVAQVVLSR GTHGGFLTIN  60
   61 LAFGFAVTLA ILVAGQVSGA HLNPAVTFAM CFLAREPWIK LPIYTLAQTL GAFLGAGIVF 120
  121 GLYYDAIWAF AGNELVVSGP NGTAGIFATY PSGHLDMVNG FFDQFIGTAA LIVCVLAIVD 180
  181 PYNNPVPRGL EAFTVGLVVL VIGTSMGFNS GYAVNPARDF GPRLFTALAG WGSEVFTTGQ 240
  241 NWWWVPIVSP LLGSIGGVFV YQLMIGCHLE QPPPSTEAEN VKLAHMKHKE QI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	45	0.87
Non-Cytoplasmic	46	60	0.71
Transmembrane Helix	61	82	0.86
Cytoplasmic	83	100	0.83
Transmembrane Helix	101	124	0.87
Non-Cytoplasmic	125	159	0.83
Transmembrane Helix	160	182	0.86
Cytoplasmic	183	191	0.71
Transmembrane Helix	192	213	0.90
Non-Cytoplasmic	214	241	0.82
Transmembrane Helix	242	265	0.86
Cytoplasmic	266	292	0.91