YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149027033, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNWAVNEGL SIFVILVWLG LNVFLFVKYY KVYDDEPKYN YTRKLLGSAL ALARAPAACL  60
   61 NFNCMLILLP VCRNLLSFLR GSSACCSTRI RRQLDRNLTF HKMVAWMIAL HTAIHTIAHL 120
  121 FNVEWCVNAR VGTSDPYSVA LSNIGDKENE EYLNFAREKI KNPEGGLYVA VTRLAGITGI 180
  181 VITLCLILII TSSTKTIRRS YFEVFWYTHH LFVIFFIGLA IHGAERIVRG QTSDSLKEHN 240
  241 LDVCADKIKE WGKIKECPVP KFAGNPPMTW KWIVGPMFLY LCERLVRFWR SQQKVVITKV 300
  301 VTHPFKTIEL QMKKKGFKME VGQYIFVKCP QVSKLEWHPF TLTSAPEEDF FSIHIRIVGD 360
  361 WTEGLFNACG CDKQEFQDAW KLPKIAVDGP FGTASEDVFS YEVVMLVGAG IGVTPFASIL 420
  421 KSVWYKYCDN ATSLRLKKIY FYWLCRDTHA FEWFADLLQL LETQMQERNN ANFLSYNIYL 480
  481 TGWDESQANH FAVHHDEEKD VITGLKQKTL YGRPNWDNEF KTIASQHPNT RIGVFLCGPE 540
  541 ALAKTLSKQS ISNSESGPRG VHFIFNKENF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.78
Transmembrane Helix	9	30	0.89
Non-Cytoplasmic	31	50	0.77
Transmembrane Helix	51	72	0.76
Cytoplasmic	73	97	0.88
Transmembrane Helix	98	119	0.90
Non-Cytoplasmic	120	171	0.96
Transmembrane Helix	172	192	0.92
Cytoplasmic	193	204	0.83
Transmembrane Helix	205	224	0.95
Non-Cytoplasmic	225	570	0.89