YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10644766, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPMPSATDG GDRSAAPSGL SASQRRAELR RRKLLMNSEQ RINRIMGFHR PGSGAEENQT  60
   61 KSKPLDSDIL NPLGVPSVSK RVVLGDSVDG GVTDYQPSGG ADIRGAQLGD KLDSFIKAPE 120
  121 CSSKDGVELR QRNRGDLTAD SAPRGSHHGL EQYLSRFEEA MKLRKQLISE KPSQEDGRTT 180
  181 EEFDSFRIFR LVGCALLALV VRAFVCKYLS IFAPFLTLQL AYMGLYKYFP KGEKKVKTTV 240
  241 LTAALLLSGI PAEVINRSMD TYSKMGEVFT DLCVYFFTFI FCHEVLEYWG PEVP

Type	Start	End	Confidence
Cytoplasmic	1	187	0.74
Transmembrane Helix	188	206	0.71
Non-Cytoplasmic	207	210	0.54
Transmembrane Helix	211	229	0.52
Cytoplasmic	230	267	0.41
Transmembrane Helix	268	286	0.39
Non-Cytoplasmic	287	294	0.54