YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62663389, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGLQLLLL GCACSLAPAL AMREVTVACS ETADLPCTAP WDPQLSYTVS WAKVSESGNE  60
   61 RLELPESKQN SSVEAPKKRP YSLTIQNTTI CSAGTYRCAL QELGGQRNFS GTVVLKVTGC 120
  121 PKEATESTFR KYRAEAVLLF SLVVFYLTLI IFTCKFARLQ SIFPDISKPG TEQAFLPVTS 180
  181 PSKHLGPVTL PKTETV

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	135	0.99
Transmembrane Helix	136	157	0.62
Cytoplasmic	158	196	0.68