YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SFXN5_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTATTASA ASAAASASNA SSDAPPFQLG KPRFQQTSFY GRFRHFLDII DPRTLFVTEK  60
   61 RLREAVQLLE DYKHGTLRPG VTNEQLWSAQ KIKQAILHPD TNEKIFMPFR MSGYIPFGTP 120
  121 IVVGLLLPNQ TLASTVFWQW LNQSHNACVN YANRNATKPS PASKFIQGYL GAVISAVSIA 180
  181 VGLNVLVQKA NKFTPATRLL VQRFVPFPAV ASANICNVVL MRYGELEEGI DVLDADGNLV 240
  241 GSSKIAARHA LLETALTRVV LPMPILVLPP IVMSMLEKTA LLQARPRLLL PVHSLVCLAA 300
  301 FGLALPLAIS LFPQMSEIET SQLEPEIARA TSSRTVVYNK GL

Type	Start	End	Confidence
Signal Peptide	1	20	0.67
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	167	0.74
Transmembrane Helix	168	187	0.92
Cytoplasmic	188	203	0.76
Transmembrane Helix	204	221	0.71
Non-Cytoplasmic	222	254	0.73
Transmembrane Helix	255	276	0.74
Cytoplasmic	277	288	0.76
Transmembrane Helix	289	312	0.89
Non-Cytoplasmic	313	342	0.87