YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BGAT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLRFGRLK CYSLHLGILP LTVLVLVFFC FVCLSLRSQE WGHPGAVNRK AYPQPRVLTP  60
   61 TRTDVLVLTP WLAPIIWEGT FDIDTLNEQF RLRNTTIGLT VFAVKKYVVF LKLFLETAEQ 120
  121 HFMVGHKVIY YVFTDRPADV PQVPLGAGRR LVVLTVRNYT RWQDVSMHRM EVISHFSEQR 180
  181 FRHEVDYLVC ADVDMKFRDH VGVEILSALF GTLHPGFYRS RRESFTYERR PQSQAYIPWD 240
  241 QGDFYYMGAF FGGSVVEVHH LTKACHQAMV EDQANGIEAV WHDESHLNKY LLYHKPTKVL 300
  301 SPEYMWDQQL LGWPSIMKKL RYVAVPKNHQ AIRN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.64
Transmembrane Helix	12	34	0.63
Non-Cytoplasmic	35	334	0.96