YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149053064, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGETDGPFK GVLVPILLPE KCYDQFFVHW DLLHVPCLKI LLSKGLGLGI VAGSLLVKLP  60
   61 QIFKLLGAKS AEGLSLQSVM LELVALTGTM VYSITNNFPF SSWGEALFLT LQTVTICFLV 120
  121 MHYRGETVKG VAFLVCFAVV LLALLSPVMP LAVPTLLQAS NVPAVVVGKL LQAATNYHNG 180
  181 HTGQLSAITV FMLFGGSLAR IFTSVQETGD PLMAGVFVVS SLCNGLIAAQ VLFYWNAKAP 240
  241 HKQKKQQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.62
Transmembrane Helix	40	57	0.73
Cytoplasmic	58	72	0.77
Transmembrane Helix	73	94	0.81
Non-Cytoplasmic	95	102	0.75
Transmembrane Helix	103	123	0.90
Cytoplasmic	124	129	0.87
Transmembrane Helix	130	153	0.87
Non-Cytoplasmic	154	181	0.69
Transmembrane Helix	182	203	0.83
Cytoplasmic	204	211	0.56
Transmembrane Helix	212	234	0.90
Non-Cytoplasmic	235	247	0.60