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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11321435
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.27
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLISQSVI NYVEEENIPA LKALLEKCKD VDERNECGQT PLMLAAEQGN VEIVKELLKN  60
   61 GANCNLEDLD NWTALISASK EGHIHIVEEL LKSGASLEHR DMGGWTALMW ACYKGRTDVV 120
  121 ELLLSHGANP SVTGLQYSVY PIIWAAGRGH ADIVHLLLQN GAKVNCSDKY GTTPLVWAAR 180
  181 KGHLECVKHL LAMGADVDQE GANSMTALIV AVKGGYTQSV KEILKRNPNV NLTDKDGNTA 240
  241 LMIASKEGHI EIVQDLLDAG TYVNIPDRSG DTVLIGAVRG GHVEIVRALL QKYADIDIRG 300
  301 QDNKTALYWA VEKGNATMVR DILQCNPDTE ICTKDGETPL IKATKMRNIE VVELLLDKGA 360
  361 KVSAVDKKGD TPLHVAIRGR SRRLAELLLR NPKDGRLLYR PNKAGETPYN IDCSHQKSIL 420
  421 TQIFGARHLS PTETDGDMLG YDLYSSALAD ILSEPTMQPP ICVGLYAQWG SGKSFLLKKL 480
  481 EDEMKTFAGQ QTEPLFQFSW LIVFLTLLLC GGLGLVFAFP VDTNLAIAIS LSFLALIYIF 540
  541 FIVIYFGGRR EGESWNWAWA LSTRLARHIG YLELLFKLMF VNPPELPEQT TKALPVRFLF 600
  601 TDYNRLSSVG GETSLAEMIA TLSDACEREF GFLATRLFRV FRTEESQGKK KWKKTCCLPS 660
  661 FVIFLFIVGC IIAGITLLAI FRVDPKHLTV NAILISIASV VGLAFVLNCR TWWQVLDSLL 720
  721 NSQRKRLHSA ASKLHKLKSE GFMKVLKCEV ELMARMAKTI DSFTQNQTRL VVIIDGLDAC 780
  781 EQDKVLQMLD TVRVLFSKGP FIAIFASDPH IIIKAINQNL NSVLRDSNIN GHDYMRNIVH 840
  841 LPVFLNSRGL SNARKFLVTS ATNGDITCSD TTGTQEDTDR RVSQNSLGEM TKLGSKTALN 900
  901 RRDTYRRRQM QRTITRQMSF DLTKLLVTED WFSDISPQTM RRLLNIVSVT GRLLRANQIT 960
  961 FNWDRLASWI NLTEQWPYRT SWLILYLEET EGLPDQMTLK TMYERISKNI PTTKDVEPLL1020
 1021 EIDGDIRNFE VFLSSRTPVL VARDVKTFLP CTVNLDPKLR EIIADVRAAR EQINIGGLAY1080
 1081 PPLPLHEGPP RPPSGYSQPA SVCSSASFNG PFPGGVVSPQ PHSSYYSGLS GPQHPFYNRA1140
 1141 AVPATGSSLL LSSMTVDVVC EKLRQIEGLD QNMMPQYCTT IKKANINGRV LSQCNIDELK1200
 1201 KEMAMNFGDW HLFRSMVLEM RSVESQVVPE DPRFLNENSS APVPHGESAR RSSHTELPLT1260
 1261 ELSSQTPYTL NFSFEELNTL GLDEGAPRHS NLSWQSQTRR TPSLSSLNSQ DSSIEISKLT1320
 1321 DKVQAEYRDA YREYIAQMSQ LEGGTGSSTI SGRSSPHSTY YIGQSSSGGS IHSTLEQERG1380
 1381 KEGELKQEDG RKSFLMKRGD VIDYSSSGVS TNEASPLDPI TEEDEKSDQS GSKLLPGKKS1440
 1441 SERPSLFQTD LKLKGGGLRY QKLPSDEDES GTGRVQITPH CSKMIRTKRL KAKQRECASP1500
 1501 QEHSAEPIRT FIKAKEYLSD ALLDKKDSSD SGVRSNESSP NHSLHNEAAD DSQLEKANLI1560
 1561 ELEDEGHSGK RGMPHSLSGL QDPIIARMSI CSEDKKSPSE CSLIASSPEE SWPACQKAYN1620
 1621 LNRTPSTVTL NNNTAPTNRA NQNFDEIEGI RETSQVILRP GPSPNPTAVQ NENLKSMAHK1680
 1681 RSQRSSYTRL SKDASELHAA SSESTGFGEE RESIL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle