YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10281748, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPLGAEADE NQTVEVKVEL YGSGPTTPRG ELPPDPEPEL IDSTKLVEVQ VVLILAYCSI  60
   61 ILLGVVGNSL VIHVVIKFKS MRTVTNFFIA NLAVADLLVN TLCLPFTLTY TLMGEWKMGP 120
  121 VLCHLVPYAQ GLAVQVSTIT LTVIALDRHR CIVYHLESKI SKQISFLIIG LAWGVSALLA 180
  181 SPLAIFREYS LIEIIPDFEI VACTEKWPGE EKSVYGTVYS LSTLLILYVL PLGIISFSYT 240
  241 RIWSKLKNHV SPGAASDHYH QRRHKTTKML VCVVVVFAVS WLPLHAFQLA VDIDSHVLDL 300
  301 KEYKLIFTVF HIIAMCSTFA NPLLYGWMNS NYRKAFLSAF RCEQRLDAIH SEVSMTFKAK 360
  361 KNLEVKKNNG LTDSFSEATN V

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.93
Transmembrane Helix	53	76	0.89
Cytoplasmic	77	86	0.85
Transmembrane Helix	87	109	0.90
Non-Cytoplasmic	110	125	0.83
Transmembrane Helix	126	146	0.90
Cytoplasmic	147	163	0.93
Transmembrane Helix	164	186	0.92
Non-Cytoplasmic	187	216	0.98
Transmembrane Helix	217	240	0.83
Cytoplasmic	241	268	0.89
Transmembrane Helix	269	287	0.95
Non-Cytoplasmic	288	306	0.87
Transmembrane Helix	307	327	0.94
Cytoplasmic	328	381	0.98