YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCJ11_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRKGIIPE EYVLTRLAED PTEPRYRTRE RRARFVSKKG NCNVAHKNIR EQGRFLQDVF  60
   61 TTLVDLKWPH TLLIFTMSFL CSWLLFAMVW WLIAFAHGDL APGEGTNVPC VTSIHSFSSA 120
  121 FLFSIEVQVT IGFGGRMVTE ECPLAILILI VQNIVGLMIN AIMLGCIFMK TAQAHRRAET 180
  181 LIFSKHAVIT LRHGRLCFML RVGDLRKSMI ISATIHMQVV RKTTSPEGEV VPLHQVDIPM 240
  241 ENGVGGNSIF LVAPLIIYHV IDSNSPLYDL APSDLHHHQD LEIIVILEGV VETTGITTQA 300
  301 RTSYLADEIL WGQRFVPIVA EEDGRYSVDY SKFGNTVKVP TPLCTARQLD EDRSLLDALT 360
  361 LASSRGPLRK RSVAVAKAKP KFSISPDSLS

Type	Start	End	Confidence
Cytoplasmic	1	71	0.90
Transmembrane Helix	72	94	0.92
Non-Cytoplasmic	95	113	0.81
Transmembrane Helix	114	135	0.51
Cytoplasmic	136	143	0.44
Transmembrane Helix	144	169	0.86
Non-Cytoplasmic	170	390	0.52