YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157822295, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESPAVTESS YNTVAMNDFF SGFVCFSINV RAFGITVLTP LYSLVFVIGV IGNVLVVLVL  60
   61 IQRKRLRNMT SIYLFNLAVS DLVFLFTLPF WVDYIVKGDW VFGNAMCKFL AGFYYLGLYS 120
  121 DMFFITLLTI DRYLAVVHAV FALRARTVTF GIISSIITWV LATLVSIPCL YFFKTQLEFT 180
  181 YQTCRAVLPK KSLIQFLRFQ ALTMNILGLI LPLLAMIICY TRIINVLHRR PNKKKAKVMR 240
  241 LIFVITLLFF LLLTPYYLAA FVSAFEDVLF TPGCVRSQQV DLALMITEAL AYTHCCVNPV 300
  301 IYVFVGERFR KYLRQLFWRR TAVSLPKWLP FHSVDRVQRS SSTSPSTGEI EVSADL

Type	Start	End	Confidence
Cytoplasmic	1	13	0.75
Transmembrane Helix	14	33	0.77
Non-Cytoplasmic	34	40	0.68
Transmembrane Helix	41	61	0.95
Cytoplasmic	62	71	0.88
Transmembrane Helix	72	92	0.95
Non-Cytoplasmic	93	110	0.89
Transmembrane Helix	111	130	0.85
Cytoplasmic	131	147	0.73
Transmembrane Helix	148	171	0.88
Non-Cytoplasmic	172	201	0.94
Transmembrane Helix	202	224	0.88
Cytoplasmic	225	240	0.88
Transmembrane Helix	241	260	0.96
Non-Cytoplasmic	261	289	0.84
Transmembrane Helix	290	306	0.85
Cytoplasmic	307	356	0.83