YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HBEGF_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLPSVVLK LFLAAVLSAL VTGESLERLR RGLAAATSNP DPPTGTTNQL LPTGADRAQE  60
   61 VQDLEGTDLD LFKVAFSSKP QALATPGKEK NGKKKRKGKG LGKKRDPCLK KYKDYCIHGE 120
  121 CRYLKELRIP SCHCLPGYHG QRCHGLTLPV ENPLYTYDHT TVLAVVAVVL SSVCLLVIVG 180
  181 LLMFRYHRRG GYDLESEEKV KLGMASSH

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	161	0.98
Transmembrane Helix	162	184	0.90
Cytoplasmic	185	208	0.96