YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1519396
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GESENTITVL LRPAQGRGAP ISAYQVVVEE ERPRRLRREP GGQDCFSVPL TFETALARGL  60
   61 VHYFGAELAA SSLLEAMPFT VGDNQTYRGF WNPPLEPRKA YLIYFQAASH LEGETRLNCI 120
  121 RIARKAACKE SKRPLEVSQR SEEMGLILGI CAGGLVVLIL LLGAIIIIIR KGRDRYAYSY 180
  181 YPKPVNMAKA TVNYRQEKTH MMTAVDRSFT DQSTLQEDER LGLSFMDAPG YSPRGDQRSS 240
  241 GVTEASSLLG GSPRRPCGRK GSPYHTGQLH PAVRVADLLQ HINQMKTAEG YGFKQEYESF 300
  301 FEGWDATKKK DKLKSGRQEP VSAYDRHRVK LHPMLGDPDA DYISANYIDG YHRPNHFIAT 360
  361 QGPKPEMIYD FWRMVWQEQC VSVVMISKLV EVGRVKCSRY WPEHSDMYGD IKITLVKTET 420
  421 LAEYVVRTFA LERRGYSARH EVRQFHFTAW PEHGVPYHAT GLLAFIRRVK ASTPPDAGPV 480
  481 VIHCSAGTGR TGCYIVLDVM LDMAECEGVV DIYNCVKTLC SRRVNMIQTE EQYIFIHDAI 540
  541 LE

Type	Start	End	Confidence
Cytoplasmic	1	144	0.54
Transmembrane Helix	145	169	0.92
Non-Cytoplasmic	170	542	0.51