YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGM_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYTKHWGEW FLNLRVPPAG VFGVAFLARV ALVFYGVFQD RTLLVRYTDI DYHVFTDAAR  60
   61 FVTEGRSPYL RATYRYTPLL SWLLTPNVYL SELFGKFLFI SCDLLTAFLL YRLLLLKGLG 120
  121 RRQACGYCVF WLLNPLPMAV SSRGNADSIV ASLVLTTLYL IEKRLIACAA VFYGFAVHMK 180
  181 MYPVTYILPI ALHLRPERDS DEGLRLARYS FQARLYDFLK RLCSWAVLLF VAIAGLTFLA 240
  241 LSFGFYYKYG WEFLEHTYLY HLTRRDIRHN FSPYFYMLYL TAESKWSFTL GIAAFLPQFI 300
  301 LLSAASFAYY RDLVFCCFLH TSIFVTFNKV CTSQYFLWYL CLLPLVMPLV RMPWKRAVVL 360
  361 LMLWFIGQAL WLAPAYVLEF QGKNTFLFIW LAGLFFLLIN CSILIQIISH YKEDRLTERI 420
  421 KYD

Type	Start	End	Confidence
Cytoplasmic	1	13	0.81
Transmembrane Helix	14	38	0.81
Non-Cytoplasmic	39	92	0.88
Transmembrane Helix	93	115	0.87
Cytoplasmic	116	221	0.64
Transmembrane Helix	222	246	0.88
Non-Cytoplasmic	247	283	0.83
Transmembrane Helix	284	302	0.86
Cytoplasmic	303	307	0.60
Transmembrane Helix	308	327	0.69
Non-Cytoplasmic	328	334	0.57
Transmembrane Helix	335	350	0.78
Cytoplasmic	351	357	0.70
Transmembrane Helix	358	378	0.92
Non-Cytoplasmic	379	385	0.86
Transmembrane Helix	386	409	0.91
Cytoplasmic	410	423	0.92