YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1654084, gi\|9...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.94
Transmembrane Helix	62	81	0.92
Non-Cytoplasmic	82	86	0.76
Transmembrane Helix	87	107	0.93
Cytoplasmic	108	114	0.80
Transmembrane Helix	115	134	0.89
Non-Cytoplasmic	135	139	0.85
Transmembrane Helix	140	161	0.91
Cytoplasmic	162	171	0.68
Transmembrane Helix	172	191	0.84
Non-Cytoplasmic	192	238	0.71
Transmembrane Helix	239	272	0.75
Cytoplasmic	273	280	0.48
Transmembrane Helix	281	315	0.75
Non-Cytoplasmic	316	316	0.28
Transmembrane Helix	317	351	0.73
Cytoplasmic	352	384	0.76
Transmembrane Helix	385	408	0.90
Non-Cytoplasmic	409	414	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMEDIPTMV KVDRGESQIL SCRGRRCGLK VLGYVTGDMK EFANWLKDKP VVLQFMDWIL  60
   61 RGISQVVFVS NPISGILILA GLLVQNPWWA LCGCVGTVVS TLTALLLSQD RSAITAGLQG 120
  121 YNATLVGILM AVFSDKGDYF WWLIFPVSAM SMTCPVFSSA LSSLFSKWDL PVFTLPFNMA 180
  181 LSLYLPATGH YNTFFPSKLF MPVSSVPNIT WSELSALELL KSLPVGVGQI YGCDNPWTGA 240
  241 IFLCAILLSS PLMCLHAAIG SLLGVIAGLS LAAPFKDIFS GLWGFNSSLA CIAIGGMFMA 300
  301 LTWQTHLLAL ACALFTAYFG ACMTHLMAAV HLPACTWSFC LATLLFLLLT TENPNIYRMP 360
  361 LSKVTYSEEN RIFYLQNKKR VVDSVCVHVC VCGCMCILPV CVLLHVYLCV SVSS