YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXCR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAEYFIWI APEGDFEEEF GNITRMLPTG EYFSPCKRVP MTNRQAVVVF YALVFLLSLL  60
   61 GNSLVMLVIL YRRRTRSVTD VYVLNLAIAD LLFSLTLPFL AVSKWKGWIF GTPLCKMVSL 120
  121 LKEVNFFSGI LLLACISVDR YLAIVHATRT LTRKRYLVKF VCMGTWGLSL VLSLPFAIFR 180
  181 QAYKPYRSGT VCYEVLGEAT ADLRITLRGL SHIFGFLLPL FIMLVCYGLT LRTLFKAHMR 240
  241 QKRRAMWVIF AVVLVFLLCC LPYNLVLLSD TLLGAHLIQD TCERRNNIDQ ALYITEILGF 300
  301 SHSCLNPVIY AFVGQSFRHE FLKILANLVH KEVLTHHSAS FRTSLTTIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.96
Transmembrane Helix	49	71	0.94
Cytoplasmic	72	80	0.91
Transmembrane Helix	81	102	0.94
Non-Cytoplasmic	103	123	0.89
Transmembrane Helix	124	144	0.87
Cytoplasmic	145	155	0.92
Transmembrane Helix	156	179	0.91
Non-Cytoplasmic	180	211	0.95
Transmembrane Helix	212	231	0.93
Cytoplasmic	232	245	0.81
Transmembrane Helix	246	267	0.95
Non-Cytoplasmic	268	297	0.92
Transmembrane Helix	298	314	0.54
Cytoplasmic	315	349	0.54