YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNN1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRSHNGSV GRPLGSGPGF LGWEPVDPEA GRPRQPTQGP GLQMMAKGQP AGLSPSGPRG  60
   61 HSQAQEEEEE EEDEDRPGSG KPPTVSHRLG HRRALFEKRK RLSDYALIFG MFGIVVMVTE 120
  121 TELSWGVYTK ESLCSFALKC LISLSTVILL GLVILYHARE IQLFLVDNGA DDWRIAMTWE 180
  181 RVSLISLELA VCAIHPVPGH YRFTWTARLA FSLVPSAAEA DVDVLLSIPM FLRLYLLARV 240
  241 MLLHSRIFTD ASSRSIGALN RVTFNTRFVT KTLMTICPGT VLLVFSISSW IVAAWTVRVC 300
  301 ERYHDKQEVT SNFLGAMWLI SITFLSIGYG DMVPHTYCGK GVCLLTGIMG AGCTALVVAV 360
  361 VARKLELTKA EKHVHNFMMD TQLTKRVKNA AANVLRETWL IYKHTRLVKK PDQSRVRKHQ 420
  421 RKFLQAIHQA QKLRTVKIEQ GKVNDQANTL ADLAKAQSIA YEVVSELQAQ QEELEARLAA 480
  481 LESRLDVLGA SLQALPSLIA QAICPLPPPW PGPSHLTTAA QSPQSHWLPT TASDCG

Type	Start	End	Confidence
Cytoplasmic	1	101	0.98
Transmembrane Helix	102	123	0.87
Non-Cytoplasmic	124	134	0.81
Transmembrane Helix	135	156	0.94
Cytoplasmic	157	181	0.85
Transmembrane Helix	182	199	0.71
Non-Cytoplasmic	200	271	0.55
Transmembrane Helix	272	297	0.80
Cytoplasmic	298	308	0.67
Transmembrane Helix	309	330	0.85
Non-Cytoplasmic	331	340	0.56
Transmembrane Helix	341	362	0.92
Cytoplasmic	363	536	0.71