YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNN2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCRYNGGV MRPLSNLSSS RRNLHEMDSE AQPLQPPASV VGGGGGASSP SAAAAASSSA  60
   61 PEIVVSKPEH NNSNNLALYG TGGGGSTGGG GGGGGGGGGS GHGSSSGTKS SKKKNQNIGY 120
  121 KLGHRRALFE KRKRLSDYAL IFGMFGIVVM VIETELSWGA YDKASLYSLA LKCLISLSTI 180
  181 ILLGLIIVYH AREIQLFMVD NGADDWRIAM TYERIFFICL EILVCAIHPI PGNYTFTWTA 240
  241 RLAFSYAPST TTADVDIILS IPMFLRLYLI ARVMLLHSKL FTDASSRSIG ALNKINFNTR 300
  301 FVMKTLMTIC PGTVLLVFSI SLWIIAAWTV RACERYHDQQ DVTSNFLGAM WLISITFLSI 360
  361 GYGDMVPNTY CGKGVCLLTG IMGAGCTALV VAVVARKLEL TKAEKHVHNF MMDTQLTKRV 420
  421 KNAAANVLRE TWLIYKNTKL VKKIDHAKVR KHQRKFLQAI HQLRSVKMEQ RKLNDQANTL 480
  481 VDLAKTQNIM YDMISDLNER SEDFEKRIVT LETKLETLIG SIHALPGLIS QTIRQQQRDF 540
  541 IETQMENYDK HVTYNAERSR SSSRRRRSSS TAPPTSSESS

Type	Start	End	Confidence
Cytoplasmic	1	134	0.89
Transmembrane Helix	135	156	0.89
Non-Cytoplasmic	157	167	0.80
Transmembrane Helix	168	189	0.95
Cytoplasmic	190	210	0.92
Transmembrane Helix	211	232	0.86
Non-Cytoplasmic	233	251	0.82
Transmembrane Helix	252	270	0.70
Cytoplasmic	271	304	0.69
Transmembrane Helix	305	327	0.89
Non-Cytoplasmic	328	345	0.65
Transmembrane Helix	346	366	0.85
Cytoplasmic	367	373	0.60
Transmembrane Helix	374	395	0.92
Non-Cytoplasmic	396	580	0.71