YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM55A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADGVDERS PLLSASHSGN VTPTAPPYLQ ESSPRAELPP PYTAIASPGT SGIPVINCRV  60
   61 CQSLINLDGK LHQHVVKCTV CNEATPIKTP PTGKKYVRCP CNCLLICKDT SRRIGCPRPN 120
  121 CRRIINLGPI MLISEEQPAQ PALPVQPEGT RVVCGHCGNT FLWMELRFNT LAKCPHCKKI 180
  181 SSVGSALPRR RCCAYVTIGM ICIFIGVGLT VGTQDFSRRF HATYVSWAIA YLLGLICLIR 240
  241 ACYWGAIRVS YPEHGFA

Type	Start	End	Confidence
Cytoplasmic	1	191	0.93
Transmembrane Helix	192	213	0.92
Non-Cytoplasmic	214	222	0.79
Transmembrane Helix	223	244	0.89
Cytoplasmic	245	257	0.86