YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5D_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVLSAADY YFFTPYVYPA TWPEDNIIRQ TVSLLVVTNL GAYILYFFCA TLSYYFVYDH  60
   61 SLMKHPQFLK NQVSREIMFT VKSLPWISIP TVSLFLLELR GYSKLYDDIG DFPNGWIHLI 120
  121 MSVISFLFFT DMLIYWIHRG LHHRLLYKHI HKPHHIWKIP TPFASHAFHP VDGFLQSLPY 180
  181 HIYPFVFPLH KVVYLGLYVL VNVWTISIHD GDFRVPQIFR PFINGSAHHT DHHMLFDYNY 240
  241 GQYFTLWDRI GGSFKHPSSF EGKGPHSYVK NMTEKESNSL AENGCKSKKL CNGEFTKNE

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.67
Transmembrane Helix	36	58	0.85
Cytoplasmic	59	77	0.70
Transmembrane Helix	78	97	0.73
Non-Cytoplasmic	98	115	0.84
Transmembrane Helix	116	137	0.94
Cytoplasmic	138	155	0.88
Transmembrane Helix	156	173	0.47
Non-Cytoplasmic	174	186	0.45
Transmembrane Helix	187	206	0.56
Cytoplasmic	207	299	0.83