YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62649388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.61
Transmembrane Helix	18	39	0.92
Cytoplasmic	40	57	0.63
Transmembrane Helix	58	80	0.86
Non-Cytoplasmic	81	93	0.57
Transmembrane Helix	94	115	0.90
Cytoplasmic	116	218	0.69
Transmembrane Helix	219	239	0.86
Non-Cytoplasmic	240	259	0.67
Transmembrane Helix	260	281	0.87
Cytoplasmic	282	292	0.70
Transmembrane Helix	293	317	0.89
Non-Cytoplasmic	318	329	0.62
Transmembrane Helix	330	352	0.82
Cytoplasmic	353	367	0.65
Transmembrane Helix	368	392	0.65
Non-Cytoplasmic	393	404	0.65
Transmembrane Helix	405	434	0.67
Cytoplasmic	435	560	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLGAFLARG RAVCRHNGLL ILSVLSVIVG CLLGFFLRTQ RLSPQEISYF QFPGELLMRM  60
   61 LKMLILPLVV SSLMSGLASL DAKTSSRLGI LTVAYYLWTT FLAVVVGIIM VSIIHPGGAA 120
  121 QKETTEQSGK PVMSSADALL DLVRNMFPAN LVEATFKQYR TKTTPVIKSP KGAAEEAPPR 180
  181 GIVIYGVQED NGSRVQNFAL DLTPPPEIVY KSEPGTSDGM NVLGIVIFSA TMGIMLGRMG 240
  241 DSGTPLVSFC QCLNESVMKI VAVAGWYFPF GIVFLIAGKI LEMDDPKAVG KKLGFYAVTV 300
  301 VCGLVVHGLL ILPLLYFLIT RKNPIVFIRG VLQALLIALA TSSSSATLPI TFKCLLENNH 360
  361 IDRRIARFVL PVGATINMDG TALYEAVAAI FIAQVNNYEL DFGQIITISI TATAASIGAA 420
  421 GIPQAGLVTM VIVLTSVGLP TDDINLIIAV DWALDRFRTM INVLGDALAA GIMAHICRKD 480
  481 FAQDMGTEKL LPCETKPVTL QEIVAAQQNG CVKSVAEASE LTLGPKCPHH IPVQVEQDEE 540
  541 LATASLDHCT IEINELETNV