YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109504413, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLLPFDSL IVNLLGISLT VLFTLLLVFI IVPAVFGVSF GIRKLYMKTL LKIFAWATLR  60
   61 MERGAKEKNH QLYKPYTNGI IAKDPTSLEE EIKEIRRSGS NKALDKTPEF ELSDIFYFCR 120
  121 KGMETIMDDE VTKRFSAEEL ESWNLLSRTN YNFQYISLRL TILWGLGVLI RYCFLLPLRI 180
  181 ALAFTGISLL VAGTTVVGYL PSGRFKEFLS KHVHLMCYRI CVRALTAIIT YHNRKNRPRN 240
  241 GGICVANHTS PIDVIILASD GYYAMVGQVH GGLMGVIQRA MVKACPHVWF ERSEVKDRHL 300
  301 VAKRLTEHVQ DKSKLPILIF PEGTCINNTS VMMFKKGSFE IGATVYPVAI KYDPQFGDAF 360
  361 WNSSKYGMVT YLLRMMTSWA IVCSVWYLPP MTREKEEDAV QFANRVKSAI ARQGGLVDLL 420
  421 WDGGLKREKV KDTFKEEQQK LYSKMIVGNH EDRSRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.80
Transmembrane Helix	17	42	0.86
Cytoplasmic	43	154	0.92
Transmembrane Helix	155	175	0.85
Non-Cytoplasmic	176	179	0.74
Transmembrane Helix	180	201	0.91
Cytoplasmic	202	369	0.63
Transmembrane Helix	370	388	0.56
Non-Cytoplasmic	389	456	0.51